Math 345-01: Introduction to  Mathematical Biology (Fall 2018)


Instructor: Junping Shi, Jones 117 (and Jones 100B), phone: 221-2030, jxshix@wm.edu

Meeting time and location: Tuesday, and Thursday 11:00am-12:20pm, Jones Hall 306

Web pages:

Office Hours: Tuesday, Wednesday and Thursday 2-3pm (Jones Hall 117), or by appointment.

Text: Mathematical Models in Biology. By Leah Edelstein-Keshet, McGraw-Hill, Boston, (1988). SIAM (2004). ISBN: 978-0-89871-554-5

Topics: linear and nonlinear difference equations, linear and nonlinear differential equations, reaction-diffusion models, bifurcation theory, population biology (logistic model, Lotka-Volterra predator-prey/competition model, chemostat model, models of infectious diseases), biochemistry, neuron models.

Prerequisites: Math 111/131 and Math 112/132

References: some material of the course will be from these books, you don't need to buy these books.

Add/drop deadline: September 7, Withdraw deadline: October 26

Computer and Calculators: Computer demonstrations will be given in classes sometime, and software Matlab will be used in some homework assignments and possibly in your semester project. Matlab are available on all university network computers, and you can download Matlab to your personal computer by using your university account. Calculator can be used in homework, exam.

Midterm and Final Exam: Both the midterm and the final exam have two parts: in-class and take-home. The exams must be completed by the students individually. Books, notes and calculator/computers can be used in both in-class and take-home exams. The in-class midterm will be given on October 18 (Thursday), and the take-home part will be given October 9 (Tuesday) and it is due October 18 (Thursday) with the in-class part. The final exam in-class part will be given on December 13 (Thursday) 2-5pm, and the take-home part will be given to you on December 10 (Monday) and due December 13 (Thursday)  with the in-class part.

Homework: Homework will be assigned every week, and it will be available from http://jxshix.people.wm.edu/schedule-math345-fall2018.html. Homework will be collected weekly and usually they are due on Friday 5pm. You can request extension for 2 homework without any penalty. The problems are from textbook or from the instructors, and some problems may involve writing simple Matlab or other computer programs. Students are encouraged to discuss homework problems with each other or with the instructor. No late homework will be accepted for any reason.

Project: A semester long project is to choose one of your favorite topics as an application of techniques learned from this course. Your work should include mathematical modeling, analytic computation, qualitative analysis and numerical computations. The final product is a written essay to be submitted in December 7 (Friday) 5pm. Your report should record all your works, including possible graphic illustrations. You can choose the topic of your project, or you can choose one from a list of possible topics provided by the instructor on the course webpage. Please email me or talk to me about your biological interest before October 5, and you should submit a title and a 200-word abstract by email to me by October 5. In the final two weeks, you will do a 5-10 minute presentation of your project in class. The project accounts for 20% of the grade (presentation 5%, and essay 15%). The project is to be done individually, but students are encouraged to discuss with each other or with the instructor. The project report is eligible to become a Math 300 paper. Additional requirement for Math 300 paper: a complete draft is due Nov 26  and I will send you comments about revising the paper.

Grading: Your final grade is calculated as follows: Attendance: Regular attendance is critical for your success in this course. I expect your presence at every lecture.
Honor Code: Students will uphold William and Mary's stated honor code as it is written, any infractions will be referred to the Honor Council.